| Rank | Team | P | MP | W | D | L | G | +/- |
|---|---|---|---|---|---|---|---|---|
| League Two | ||||||||
| 1 |
Stockport County
|
92 | 46 | 27 | 11 | 8 | 96-48 | 48 |
| 1 |
Bradford City
|
73 | 41 | 21 | 10 | 10 | 54-34 | 20 |
| 1 |
Leyton Orient
|
91 | 46 | 26 | 13 | 7 | 61-34 | 27 |
| 2 |
Port Vale
|
73 | 41 | 20 | 13 | 8 | 54-40 | 14 |
| 2 |
Stevenage
|
85 | 46 | 24 | 13 | 9 | 61-39 | 22 |
| 2 |
Wrexham
|
88 | 46 | 26 | 10 | 10 | 89-52 | 37 |
| 3 |
Mansfield Town
|
86 | 46 | 24 | 14 | 8 | 90-47 | 43 |
| 3 |
Northampton Town
|
83 | 46 | 23 | 14 | 9 | 62-42 | 20 |
| 3 |
Walsall
|
72 | 41 | 20 | 12 | 9 | 72-49 | 23 |
| 4 |
Doncaster Rovers
|
70 | 40 | 20 | 10 | 10 | 61-46 | 15 |
| 5 |
AFC Wimbledon
|
68 | 41 | 19 | 11 | 11 | 54-31 | 23 |
| 6 |
Notts County
|
68 | 41 | 19 | 11 | 11 | 61-40 | 21 |
| 7 |
Crawley Town
|
70 | 46 | 21 | 7 | 18 | 73-67 | 6 |
| 7 |
Grimsby Town
|
65 | 41 | 20 | 5 | 16 | 57-58 | -1 |
| 8 |
Colchester United
|
62 | 41 | 15 | 17 | 9 | 49-40 | 9 |
| 9 |
Crewe Alexandra
|
61 | 41 | 15 | 16 | 10 | 47-41 | 6 |
| 10 |
Chesterfield
|
58 | 40 | 16 | 10 | 14 | 61-49 | 12 |
| 11 |
Salford City
|
58 | 40 | 15 | 13 | 12 | 50-46 | 4 |
| 12 |
Bromley
|
56 | 41 | 14 | 14 | 13 | 56-51 | 5 |
| 13 |
Fleetwood Town
|
56 | 41 | 14 | 14 | 13 | 57-53 | 4 |
| 14 |
Swindon Town
|
54 | 41 | 13 | 15 | 13 | 61-57 | 4 |
| 15 |
Barrow
|
52 | 41 | 14 | 10 | 17 | 47-47 | 0 |
| 16 |
Cheltenham Town
|
50 | 41 | 13 | 11 | 17 | 51-61 | -10 |
| 17 |
Newport County
|
47 | 41 | 13 | 8 | 20 | 51-68 | -17 |
| 18 |
Gillingham
|
46 | 40 | 11 | 13 | 16 | 35-43 | -8 |
| 19 |
Milton Keynes Dons
|
46 | 41 | 13 | 7 | 21 | 51-65 | -14 |
| 20 |
Harrogate Town
|
45 | 41 | 12 | 9 | 20 | 33-52 | -19 |
| 21 |
Tranmere Rovers
|
43 | 41 | 10 | 13 | 18 | 36-58 | -22 |
| 22 |
Accrington Stanley
|
42 | 41 | 10 | 12 | 19 | 46-63 | -17 |
| 23 |
Morecambe
|
36 | 41 | 10 | 6 | 25 | 37-60 | -23 |
| 23 |
Sutton United
|
42 | 46 | 9 | 15 | 22 | 59-84 | -25 |
| 23 |
Hartlepool United
|
43 | 46 | 9 | 16 | 21 | 52-78 | -26 |
| 24 |
Forest Green Rovers
|
42 | 46 | 11 | 9 | 26 | 44-78 | -34 |
| 24 |
Carlisle United
|
34 | 41 | 8 | 10 | 23 | 34-63 | -29 |
| 24 |
Rochdale
|
38 | 46 | 9 | 11 | 26 | 46-70 | -24 |
| League Two, Playoffs | ||||||||
| 4 |
Milton Keynes Dons
|
78 | 46 | 23 | 9 | 14 | 83-68 | 15 |
| 4 |
Stockport County
|
79 | 46 | 22 | 13 | 11 | 65-37 | 28 |
| 5 |
Doncaster Rovers
|
71 | 46 | 21 | 8 | 17 | 73-68 | 5 |
| 5 |
Carlisle United
|
76 | 46 | 20 | 16 | 10 | 66-43 | 23 |
| 6 |
Crewe Alexandra
|
71 | 46 | 19 | 14 | 13 | 69-65 | 4 |
| 6 |
Bradford City
|
76 | 46 | 20 | 16 | 10 | 61-43 | 18 |
| 7 |
Crawley Town
|
70 | 46 | 21 | 7 | 18 | 73-67 | 6 |
| 7 |
Salford City
|
75 | 46 | 22 | 9 | 15 | 72-54 | 18 |